Bridging Themes: Short Protein Segments Found in Different Architectures
نویسندگان
چکیده
Abstract The vast majority of theoretically possible polypeptide chains do not fold, let alone confer function. Hence, protein evolution from preexisting building blocks has clear potential advantages over ab initio emergence random sequences. In support this view, sequence similarities between different proteins is generally indicative common ancestry, and we collectively refer to such homologous sequences as “themes.” At the domain level, homology routinely detected. However, short themes which are segments, or fragments intact domains, particularly interesting because they may provide hints about opposed divergence their mixing-and-matching form multi-domain proteins. Here identified 525 representative themes, comprising 20–80 residues that unexpectedly shared domains considered have emerged independently. Among these “bridging themes” ones most ancient for example, Rossmann, P-loop NTPase, TIM-barrel, flavodoxin, ferredoxin-like. We elaborate on several cases, where bridging mediate ligand binding. Ligand binding contributed stability plasticity blocks, ability invade serve starting points completely new domains.
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ژورنال
عنوان ژورنال: Molecular Biology and Evolution
سال: 2021
ISSN: ['0737-4038', '1537-1719']
DOI: https://doi.org/10.1093/molbev/msab017